Common Polish Clades
This is an index of Supplementary Data files that go along with a pair of articles published in the Fall issue of www.jogg.info.
This index is the complete list of files in this file folder. This folder has 33 files including this index. These files are for archive purposes, so they will not be updated.
Future updates are in a separate folder PolishCladesUpdate.
Many of these files have user functions or macro subroutines.
Excel gives a virus warning when opening such files.
You can click “Disable Macros” to view the files without the macros.
You need to click “Enable Macros” to do new calculations using those files.
is the master file. A
tool for assessing
Polish Project Data & Results
PolishProject15May2009.xls Archive copy of the data used for the articles. Downloaded from the Polish Project at FamilyTreeDNA.com, and converted to an Excel file.
Evaluator15May2009.xls Data formatted. This is a copy of the advanced tool
“Evalulator.xls” (below), with the
Polish12.xls Complete list of 12 marker haplotypes, count
for each. Ysearch
comparison. This is the extended version
of Table 1 submitted for publication in the article “Common Polish Y-
Polish9.xls Complete list of 9 marker haplotypes. For comparison to Pawlowski. This is the extended version of Table 2
submitted for publication in the article “Common Polish Y-
Haplotypes.xls A list of proposed modal haplotypes for the Polish Project Types, including some speculative types for experimentation. This file has full 67 marker modal haplotypes, and also “definition” modal haplotypes.
YsearchURLs.xls Universal Resource Locator Codes for checking Ysearch, selected types, using definition modal haplotypes.
Results15May2009.xls Summary of all type and subtype results for the Polish Project. Data is color coded to highlight types. This is a copy of “Calculator.xls”, so genetic distance steps can be calculated and sorted for any type.
The following are copies of the tool “Type.xls” for each type identified in the Polish Project; the Documentation sheet is deleted from the copies to save file space.
These files should be
useful for any Y-
Calculator.xls “Calculator” sheet calculates mutation step distance for each haplotype in a database, compared to a reference (modal) haplotype. Several different Calculator versions. “Masks” allow selective removal of markers. The “Documentation” sheet has explanations, instructions.
Evaluator.xls Tool for searching for sets of closely matched haplotype data. This file has a macro, and a “Documentation” sheet.
HaplotypeGenerator.xls Makes a complete list of haplotypes, for an
input number of markers, and for an input maximum mutation step count. “Haplotype Counts” sheet has a table of total
possible haplotypes for each number of markers; this is the extended version of Table
1 submitted for publication in the article “
MCSMM.doc Multi Clade Stepwise
Mutation Model. Draft of an article describing a much more complicated model for
MCSMM.xls Multi Clade Stepwise Mutation Model. With sample data. The Bessel function is required for this file. Some older versions of Excel require the “Tools, Add-Ins, Analysis ToolPac”.
HaplotypeCounterGenerator.xls Needed as input for MCSMM.xls. Counts up how many of each haplotype in a data set. Removes all but one copy of each. Generates the complete set of haplotypes (with zero count for those haplotypes not present in the data set).
Yhrd Analysis; Polish vs Neighbors
YhrdMap.doc A copy of the map indicating all the east and central European cities with data.
PtypeByCityYhrd.xls Data. Percent of P type by city.
YhrdReminders.html Notes for use of the Yhrd site.
Polish Project Assignments
The Polish Project site has links to two files that I maintain, using the “mountains in haplospace” method to assign project members to types. Here are those two links: